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"name": "Whole-brain spontaneous GCaMP activity with NeuroPAL cell ID information of semi-restricted worms",
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"citation": "Suzuki, Ryoga; Wen, Chentao; Sprague, Daniel; Onami, Shuichi; Kimura, Koutarou D (2024) Whole-brain spontaneous GCaMP activity with NeuroPAL cell ID information of semi-restricted worms (Version draft) [Data set]. DANDI archive. https://dandiarchive.org/dandiset/000692/draft",
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"dateCreated": "2023-11-03T08:53:28.963969+00:00",
"description": "Spontaneous neuronal activities were extracted from GCaMP and tagRFP images, covering nearly all neurons in the nematode C. elegans brain. Cell segmentation and tracking were performed using 3DeeCellTracker (https://github.com/WenChentao/3DeeCellTracker). Neuronal identity information was derived from NeuroPAL signals with the NeuroPAL Auto-ID software (https://www.yeminilab.com/neuropal) and manual corrections. During the data acquisition, worms were semi-restricted in a microfluidic device (https://www.nature.com/articles/nature06292). Note: There are occasional transient failures in neuronal tracking. We recommend researchers to use a moving median filter (e.g., ±3) on the time series data to address this issue.",
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"acknowledgement": "Data was acquired by Ryoga Suzuki in the Kimura lab. The software for data formatting was performed by Chentao Wen, Shuichi Onami, and Daniel Sprague.",
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